Hi @dennise as mentioned above this seems to be a bit of an ongoing thing. The best thing I can recommend is ALWAYS refresh your game prior to heading into your Daily Quests, and don't begin collecting productions until you do so to make sure they count.
I always leave my Browser Game open overnight (albeit in sleepy mode) I know I shouldn't and it's naughty but i'm a bit of an anarchist. So when I log back in of a morning, the game has a bit of catching up to do despite it looking okay. So I always refresh before I do anything!
If after a refresh things are still looking a bit weird, then by all means raise a Ticket with Support and they will be happy to look into it.